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quick training in statistical genetics

material for introduction to statistical genetics

Transcriptome QGT Training 2024

homework 5

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homework

© HakyImLab and Listed Authors - CC BY 4.0 License

lab 4

In this lab we are going to use the PRSice software to take height GWAS results and predict height of the Personal Genome Project individuals using their genotype data.

homework 4

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homework

© HakyImLab and Listed Authors - CC BY 4.0 License

lecture 8

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lecture

Lecture 8 notes link

lecture 7

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lecture

Lecture 7 notes link

lab 3

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lab

In this lab, you will run all the steps of a GWAS analysis using the Marees et al tutorial.

homework 3

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homework

Calculate PCs using plink (10pt)

lecture 6

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lecture

Lecture 6 notes link

lecture 5

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lecture

Lecture 5 slides link

lab 2

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lab

get started with simulations for homework 2

lecture 3

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lecture

Lecture 3 notes link

homework 2

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homework

Hint: use the code from the lecture slides or here

Images GWAS

© HakyImLab and Listed Authors - CC BY 4.0 License

lecture 2

Dissection of Genetics & Prediction of Cancer Risk: Methods & Tools

lab 1 - command line and R

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lab

We will learn to use the command line by doing. Follow the instructions below.

homework 1

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homework

Homeworks problems for week 1

course checklist

logistics

three months prior

Lab Setup

copied from QGT 2023 posit

© HakyImLab and Listed Authors - CC BY 4.0 License